Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	Ranked list_DGE_squamousT11b_vs_all adenosadeno_HSE13-NT copy
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_pos
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.4242282
Normalized Enrichment Score (NES)	2.0280616
Nominal p-value	0.0033112583
FDR q-value	0.0024903852
FWER p-Value	0.012

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Ecm1	27	5.794	0.0496	Yes
2	Spp1	69	4.139	0.0804	Yes
3	Cxcl5	101	3.685	0.1090	Yes
4	Gja1	151	3.006	0.1273	Yes
5	Pthlh	152	3.000	0.1559	Yes
6	Htra1	183	2.728	0.1756	Yes
7	Tnc	191	2.672	0.1996	Yes
8	Gas1	249	2.312	0.2097	Yes
9	Vim	302	2.105	0.2188	Yes
10	Sntb1	307	2.065	0.2376	Yes
11	Tpm2	308	2.054	0.2572	Yes
12	Aplp1	314	2.028	0.2755	Yes
13	Matn2	316	2.022	0.2945	Yes
14	Cxcl15	326	1.980	0.3115	Yes
15	Cd44	329	1.976	0.3299	Yes
16	Lgals1	400	1.684	0.3313	Yes
17	Igfbp2	408	1.668	0.3457	Yes
18	Dst	434	1.596	0.3556	Yes
19	Itga5	446	1.560	0.3682	Yes
20	Tgfbi	502	1.443	0.3704	Yes
21	Pmp22	517	1.400	0.3808	Yes
22	Emp3	537	1.365	0.3898	Yes
23	Capg	574	1.263	0.3942	Yes
24	Sat1	614	1.180	0.3973	Yes
25	Gpc1	623	1.167	0.4067	Yes
26	Cadm1	633	1.126	0.4155	Yes
27	Igfbp4	680	1.034	0.4157	Yes
28	Glipr1	687	1.026	0.4242	Yes
29	Gadd45b	804	0.862	0.4080	No
30	Bmp1	903	0.757	0.3946	No
31	Flna	905	0.755	0.4016	No
32	Tgfb1	940	0.718	0.4013	No
33	Col4a1	975	0.682	0.4006	No
34	Dab2	1031	0.623	0.3950	No
35	Col3a1	1034	0.619	0.4004	No
36	Slc6a8	1042	0.611	0.4048	No
37	Serpine1	1049	0.610	0.4093	No
38	Col5a2	1080	0.573	0.4085	No
39	Anpep	1162	0.504	0.3962	No
40	Tpm1	1262	-0.514	0.3803	No
41	Itgb5	1316	-0.520	0.3741	No
42	Itgb1	1391	-0.531	0.3635	No
43	Timp3	1480	-0.548	0.3502	No
44	Slit3	1568	-0.563	0.3373	No
45	Bgn	1714	-0.584	0.3123	No
46	Fuca1	1814	-0.603	0.2972	No
47	Pdlim4	1851	-0.610	0.2954	No
48	Pfn2	2014	-0.638	0.2674	No
49	Col6a3	2117	-0.657	0.2522	No
50	Sdc4	2418	-0.710	0.1957	No
51	Pvr	2520	-0.731	0.1814	No
52	Col16a1	2564	-0.740	0.1794	No
53	Lamc1	2789	-0.788	0.1397	No
54	Mmp2	2903	-0.814	0.1237	No
55	Fgf2	2942	-0.823	0.1235	No
56	Tgm2	2996	-0.839	0.1204	No
57	Tgfbr3	3149	-0.885	0.0968	No
58	Thbs1	3344	-0.945	0.0649	No
59	Pcolce	3494	-0.995	0.0430	No
60	Nt5e	3535	-1.010	0.0442	No
61	Eln	3761	-1.107	0.0074	No
62	Lamc2	3814	-1.136	0.0073	No
63	Ccn2	3829	-1.143	0.0152	No
64	Cdh11	3879	-1.171	0.0161	No
65	Dcn	3919	-1.196	0.0192	No
66	Serpine2	3936	-1.205	0.0274	No
67	Qsox1	3954	-1.217	0.0354	No
68	Tnfrsf12a	4008	-1.254	0.0362	No
69	Mgp	4278	-1.484	-0.0063	No
70	Basp1	4338	-1.550	-0.0040	No
71	Wnt5a	4348	-1.574	0.0091	No
72	Areg	4558	-1.937	-0.0164	No
73	Cdh6	4793	-3.096	-0.0362	No
74	Sgcd	4820	-4.373	-0.0000	No